PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G078600.1
Common NamePOPTR_0017s11470g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 387aa    MW: 43743.7 Da    PI: 8.3725
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G078600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-1169125155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Potri.017G078600.1  69 SRFRGVSRHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 125
                         789******************88887784446666.9*******************98 PP

2AP252.41.3e-16168219155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Potri.017G078600.1 168 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 219
                         89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.27E-1469135IPR016177DNA-binding domain
CDDcd000182.58E-1669135No hitNo description
PfamPF008478.0E-969125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-1270134IPR001471AP2/ERF domain
PROSITE profilePS5103218.00470133IPR001471AP2/ERF domain
SMARTSM003805.1E-1870139IPR001471AP2/ERF domain
PRINTSPR003672.7E-57182IPR001471AP2/ERF domain
CDDcd000183.37E-24168229No hitNo description
PfamPF008474.7E-12168219IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-18168229IPR016177DNA-binding domain
PROSITE profilePS5103218.953169227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-18169228IPR001471AP2/ERF domain
SMARTSM003802.7E-26169233IPR001471AP2/ERF domain
PRINTSPR003672.7E-5209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMMIKNEENP GRRRGCIADS EAQVARCVKR RRRDPAIVAL GSDDNQSQQQ MPQKQTDQTS  60
AATTVKRSSR FRGVSRHRWT GRFEAHLWDK LSWNVTQKKK GKQGAYDEEE SAARAYDLAA  120
LKYWGTSTFT NFPISDYEKE IEIMQTVTKE EYLASLRRKS SGFSRGVSKY RGVARHHHNG  180
RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI NAVTNFDLST YIRWIKPGVA  240
AQAAANELQT VTDPQTAATL TDTYTPREET KPSLFLPNQF TADYLNSPPK LDAFQNNIFV  300
DSSNKTSSPT ALSLLLRSSV FRELVEKNSN VCEEETDGNE IKNQPMAGSD DEYGGIFYDG  360
IGDIPFVYSS NKYSLGLEER ELQFVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11132RRRGCIADSEAQVARCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840640.0AC184064.2 Populus trichocarpa clone Pop1-109C22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323836.10.0hypothetical protein POPTR_0017s11470g
SwissprotQ6X5Y63e-91WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLB9IJT70.0B9IJT7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-91AP2 family protein